Publications

Journals:

Hui-Yuan Yeh, Chieh-fu Jeff Cheng, ChingJung Huang, Xiaoya Zhan, Weng Kin Wong, Piers D. Mitchell*. Discovery of Eurytrema Eggs in Sediment from a Colonial Period Latrine in Taiwan. (Accepted by The Korean Journal of Parasitology; Ref.: 19-149-CR.R3).

Xiaoya Zhan, Hui-Yuan Yeh, Dong Hoon Shin, Jong-Yil Chai, Min Seo, Piers D Mitchell*. Differential Change in the Prevalence of the Ascaris, Trichuris and Clonorchis infection Among Past East Asian Populations. (Accepted by The Korean Journal of Parasitology; Ref.: 19-173-BC.R1).

Nguyen Quoc Khanh Le, Edward Kien Yee Yapp, N. Nagasundaram, Hui-Yuan Yeh*. Classifying promoters by interpreting the hidden information of DNA sequences via deep learning and combination of continuous FastText N-grams. Frontiers. https://doi.org/10.3389/fbioe.2019.00305. Webpage. Download PDF.

Nagasundaram Nagarajan, Edward K. Y. Yapp, Nguyen QuocKhanh Le, Balu Kamaraj, Al-Subaie Abeer Mohammed and Yeh Hui-Yuan*. Application of computational biology and artificial intelligence technologies in cancer precision drug discovery. (Accepted by BioMed Research International; Ref.: 8427042).

Nguyen Quoc Khanh Le, Edward Yapp, Nagasundaram Nagarajan, Matthew Chin Heng Chua, Hui Yuan Yeh*. Computational identification of vesicular transport proteins from sequences using deep gated recurrent units architecture (Accepted by Computational and Structural Biotechology Journal; Ref.: CSBJ_2019_201_R1).

Xiaoya Zhan, Ai-Jia Mu, Liang Chen, Qun Zhang, Yong Wu, Wanglin Hu, Hui-Yuan Yeh*. Differential diagnosis of the cranial perforations on the Early Iron Age along the Ancient Silk Road in Xinjiang, China. https://doi.org/10.1007/s12520-019-00942-0. Webpage. Download PDF.

Qun Zhang, Xuezhou Li, Qian Wang, Hui-Yuan Yeh, Hong Zhu, Yanguo Qin*, Quanchao Zhang*. Osteological Evidence of Violence during the Formation of the Chinese Northern Nomadic Cultural Belt in the Bronze Age (Accepted by Archaeological and Anthropological Sciences; Ref.: Ms. No. AASC-D-18-00299R).

Qun Zhang, Quanchao Zhang, Shiyu Yang, Paul C. Dechow, Hong Zhu, Hui-Yuan Yeh*, Qian Wang*. Divided Zygoma in Holocene Human Populations from Northern China. American Journal of Human Biology. DOI: 10.1002/ajhb.23314. Webpage. Download PDF.

Jenna M Dittmar, Elizabeth S Berger, Xiaoya Zhan, Ruilin Mao, Hui Wang, Hui-Yuan Yeh*. Skeletal evidence for violent trauma from the Bronze Age Qijia culture (2,300-1,500 BCE), Gansu Province, China. International Journal of Paleopathology. https://doi.org/10.1016/j.ijpp.2019.08.002. Webpage. Download PDF.

Kok Keng Tan, Nguyen Quoc Khanh Le, Hui-Yuan Yeh *, Matthew Chin Heng Chua*. 2019. Ensemble of Deep Recurrent Neural Networks for Identifying Enhancers via Dinucleotide Physiochemical Properties. Cells. doi: 10.3390/cells8070767. Webpage. Download PDF.

Nguyen Quoc Khanh Le; Edward Kien Yee Yapp; Hui-Yuan Yeh*. 2019. ET-GRU: Using multi-layer gated recurrent units to identify electron transport proteins. BMC Bioinformatics. https://doi.org/10.1186/s12859-019-2972-5. Webpage. Download PDF.

Guanglin He, Atif Adnan, Allah Rakha, Hui-Yuan Yeh, Mengge Wang, Xing Zou, Jianxin Guo, Muhammad Rehman, Abulhasan Fawad, Pengyu Chen, Chuan-Chao Wang*. 2019. A comprehensive exploration of the genetic legacy and forensic features of Afghanistan and Pakistan Mongolian-descent Hazara. Forensic Science International: Genetics. https://doi.org/10.1016/j.fsigen.2019.06.018. Webpage. Download PDF.

Qun Zhang, Peng Liu, Hui-Yuan Yeh, Xingyu Man, Lixin Wang, Hong Zhu, Qian Wang, Quanchao Zhang*. Intentional cranial modification from Houtaomuga Site, Jilin, China – Earliest Evidence and Longest in situ Practice during the Neolithic Age. American Journal of Physical Anthropology. https://doi.org/10.1002/ajpa.23888. Webpage. Download PDF.

Chandrasekhar Gopalakrishnan, Abeer Mohammed Al-Subaie, Nagasundaram N, Hui-Yuan Yeh, Iftikhar Alam Tayubi, Balu Kamaraj. Prioritization of SNPs in y+LAT-1 culpable of Lysinuric protein intolerance and their mutational impacts using computational approach. Journal of Cellular Biochemistry. https://doi.org/10.1002/jcb.29172. Webpage. Download PDF.

Nguyen Quoc Khanh Le*, Tuan-Tu Huynh, Edward Kien Yee Yapp, and Hui-Yuan Yeh*. 2019. Identification of Clathrin proteins by incorporating hyperparameter optimization in deep learning and PSSM profiles. 2019. Computer Methods and Programs in Biomedicine. 177:81-88. Webpage. Download PDF.

Nguyen Quoc Khanh Le*, Quang-Thai Ho, Edward Kien Yee Yapp, Hui-Yuan Yeh*, and Yu-Yen Ou*. 2019. DeepETC: a deep convolutional neural network architecture for investigating and classifying electron transport chain’s complexes. Neurocomputing. https://doi.org/10.1016/j.neucom.2019.09.070. Webpage. Download PDF.

N.Nagasundaram*, Edward K. Y. Yapp, Nguyen Quoc Khanh Le, Hui-Yuan Yeh*. 2019. In silico screening of sugar alcohol compounds to inhibit viral matrix protein VP40 of Ebola virus. Molecular Biology Reports. https://doi.org/10.1007/s11033-019-04792-w. WebpageDownload PDF

Nguyen Quoc Khanh Le, Edward Kien Yee Yapp, Yu-Yen Ou, and Hui-Yuan Yeh*. 2019. iMotor-CNN: Identifying molecular functions of cytoskeleton motor proteins using 2D convolutional neural network via Chou’s 5-step rule. Analytical Biochemistry. https://doi.org/10.1016/j.ab.2019.03.017. Webpage. Download PDF.

Qi Feng Lin, Nadiah Haris Hor Suk Yi, Piers Mitchell, and Hui-Yuan Yeh*. 2019.Oriental schistosomiasis in China: the eradication campaign during the 1940s and 1950s and rethinking its role in the Chinese Civil War (Accepted by European Journal of East Asian Studies).

Nguyen Quoc Khanh Le, Edward Kien Yee Yapp, Quang-Thai Ho, Nagarajan Nagasundaram, Yu-Yen Ou, and Hui-Yuan Yeh*. 2019. iEnhancer-5Step: identifying enhancers using hidden information of DNA sequences via Chou’s 5-step-rule and word embedding. Analytical Biochemistry. 571: 53-61. https://doi.org/10.1016/j.ab.2019.02.017. Webpage. Download PDF.

Hui-Yuan Yeh*, Xiaoya Zhan, Wuyun Qi.  2019. A comparison of ancient parasites as seen from archeological contexts and early medical texts in China. International Journal of Paleopathology. 25: 30-38. https://doi.org/10.1016/j.ijpp.2019.03.004. Webpage. Download PDF.

Jenna M Dittmar, Xiaoya Zhan, Elizabeth Berger, Ruilin Mao, Hui Wang, Yongsheng Zhao, Hui-Yuan Yeh*. 2019. Cranial surgery in the Bronze Age Qijia Culture (2100-1400 BCE), Gansu, China (Accepted by Acta Anthropologica Sinica; Paper ID 7074-1).

Xiufeng Huang, Qinghui Zhou, Xiaoyun Bin, Shu Lai, Chaowen Lin, Rong Hu, Jiashun Xiao, Dajun Luo, Yingxiang Li, Lan-Hai Wei, Hui-Yuan Yeh, Gang Chen and Chuan-Chao Wang. 2018. The genetic assimilation in language borrowing inferred from Jing People. American Journal of Physical Anthropology. DOI: 10.1002/ajpa.23449. Webpage. Download PDF.

Faith S Williams, Theo Arnold-Foster, Hui-Yuan Yeh, Marissa L Ledger, Jan Baeten, Jeroen Poblome, Piers D Mitchell. 2017. Intestinal parasites from the 2nd–5th century AD latrine in the Roman Baths at Sagalassos (Turkey). International Journal of Paleopathology. 19:37-42. DOI: 10.1016/j.ijpp.2017.09.002. Webpage. Download PDF.

Hong-Bing Yao, Senwei Tang, Xiaotian Yao, Hui-Yuan Yeh, Wanhu Zhang, Zhiyan Xie, Qiajun Du, Liying Ma, Shuoyun Wei, Xue Gong, Zilong Zhang, Quanfang Li, Bingying Xu, Hu-Qin Zhang, Gang Chen, Chuan-Chao Wang. 2017. The genetic admixture in Tibetan-Yi Corridor. American Journal of Physical Anthropology. DOI: 10.1002/ajpa.23291. Webpage. Download PDF.

Chuan-Chao Wang, Lei Shang, Hui-Yuan Yeh, Lan-Hai Wei. 2016. The consistencies of Y chromosomal and autosomal continental ancestry vary among haplogroups. Journal of Forensic Science and Medicine 2(4): 229-232. DOI: 10.4103/2349-5014.197925. Webpage. Download PDF.

Hui-Yuan Yeh, Piers D Mitchell. 2016. Ancient Human Parasites in Ethnic Chinese Populations. The Korean Journal of Parasitology 54(5):565-572. DOI: 10.3347/kjp.2016.54.5.565. Webpage. Download PDF.

Hui-Yuan Yeh, Yu-Pei Chen, Piers D Mitchell*. 2016. Human Intestinal Parasites From the Wushantou Site in Neolithic Period Taiwan (800–1 BC). The Journal of Island and Coastal Archaeology. DOI:10.1080/15564894.2016.1218394. Webpage. Download PDF.

Hui-Yuan Yeh, Ruilin Mao, Hui Wang, Wuyun Qi, Piers D Mitchell*. 2016. Early evidence for travel with infectious diseases along the Silk Road: intestinal parasites from 2,000 year old personal hygiene sticks in a latrine at Xuanquanzhi relay station in China. Journal Archaeological Science: Reports 9: 758-64. DOI: 10.1016/j.jasrep.2016.05.010. Webpage. Download PDF.

Hui-Yuan Yeh, Kay Prag, Christa Clamer, Jean-Baptiste Humbert, Piers D Mitchell*. 2015. Human intestinal parasites from a Mamluk Period cesspool in the Christian Quarter of Jerusalem: potential indicators of long distance travel in the 15th century AD. International Journal of Paleopathology 9:69-75. DOI: 10.1016/j.ijpp.2015.02.003. Webpage. Download PDF.

Hui-Yuan Yeh, Aleks Pluskowski, Uldis Kalējs, Piers D Mitchell*. 2014. Intestinal Parasites in a mid-14th Century Latrine from Riga, Latvia: Fish Tapeworm and the Consumption of Uncooked Fish in the Medieval Eastern Baltic Region. Journal of Archaeological Science 49: 83-89. DOI: 10.1016/j.jas.2014.05.001. Webpage. Download PDF.

Piers D Mitchell, Hui-Yuan Yeh, Jo Appleby, Richard Buckley. 2013. The intestinal parasites of King Richard III. The Lancet 382: 888. DOI: 10.1016/S0140-6736(13)61757-2. Webpage. Download PDF.

Book Chapters:

Hui-Yuan Yeh, Piers D Mitchell. 2017. Intestinal parasites in the cesspool.In: Clamer, C., Prag, K., Humbert, J.-B. (eds), Colegio dePilar: Excavations in Jerusalem,Christian Quarter. Cahiers de la Revue Biblique, 88. Peeters: Leuven. p.154-61. Webpage.

Hui-Yuan Yeh, Piers D Mitchell. Parasites and Baltic Crusading in Medieval Riga: Insights into Disease, Diet and Hygiene. In: Terra Sacra: The Ecology of Crusading, Colonisation and Religious Conversion in the Medieval Eastern Baltic. Ed. A. Pluskowski. Turnhout: Brepols (in press).

Other Scholarly Articles:

Jiun-Yu Liu*, Hui-Yuan Yeh*, Yi-Chang Liu, Li-Ying Wang, Xinyi Liu. 2016. A Preliminary Result of the Carbon and Nitrogen Stable Isotope Analysis of the Hanben Site. In: Proceedings of 2015 Annual Conference of Taiwan Archaeologists, Ed.  National Museum of Prehistory. Taitung, Taiwan. * denotes equal contribution.

Hui-Yuan Yeh. 2010. Development and review of physical anthropology in Taiwan, Man and Culture 41: 97-102. http://issuu.com/rubyhsieh/docs/07physical.

Hui-Yuan Yeh. 2010. An Osteomorphometric Perspective on Sexual Division of Labour of the Nia-sung Culture in the Shih-Chiao Site, Tainan County. In: Proceedings of the conference and workshop of Sitting and Chatting on Peinan Site: A Cross-Border Thinking and Integration of Fields, Ed. National Museum of Prehistory. Taitung, Taiwan.

Hui-Yuan Yeh. 2009. An explanation for human remains in No.2 location of Lingding Site. In: Final report of investigation and research of Lingding Dakeng Site, Ed. Yu-Pei Chen. Hualien County, Taiwan: Cultural Affairs Bureau pp.139-147.

Hui-Yuan Yeh. 2009. Human remains. In: Final report of arrangement and research project of jar burial in Shih-Chiao site at Nanke special area, Ed. Yu-Pei Chen. Taitung, Taiwan: National Museum of Prehistory pp.38-54. Webpage.